Oil & Gas Science and Technology - Revue d'IFP Energies nouvelles

Gwendolyn J. Gregory, Cong Wang, Sunitha Sadula, Sam Koval, Raul Lobo, Dionisios G. Vlachos and E. Terry Papoutsakis
(2022)
DOI: 10.1101/2022.12.20.521199
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Biodegradation and detoxification of aliphatic and aromatic hydrocarbons by new yeast strains

Mohamed Hashem, Saad A. Alamri, Sharefah S.A.A. Al-Zomyh and Sulaiman A. Alrumman
Ecotoxicology and Environmental Safety 151 28 (2018)
DOI: 10.1016/j.ecoenv.2017.12.064
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The Occurrence of Crude Oil-Degrading Bacteria in Some Sponges Collected at the Persian Gulf: Ecological Importance and Biotechnological Application

Nasrin Ansari, Farokh Rokhbakhsh-Zamin, Mehdi Hassanshahian and Majid Askari Hesni
Polycyclic Aromatic Compounds 43 (1) 205 (2023)
DOI: 10.1080/10406638.2021.2014529
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Composition of the microbial communities of bituminous constructions at natural oil seeps at the bottom of Lake Baikal

V. V. Kadnikov, A. V. Lomakina, A. V. Likhoshvai, et al.
Microbiology 82 (3) 373 (2013)
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Aerobic Utilization of Hydrocarbons, Oils and Lipids

Renata Moreno and Fernando Rojo
Aerobic Utilization of Hydrocarbons, Oils and Lipids 1 (2017)
DOI: 10.1007/978-3-319-39782-5_6-1
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Effects of bacterial cell density and alternating microbial- and enzymolysis-enhanced oil recovery on oil displacement efficiency

Hui Gao, Hangxian Lai, Junhui Zhang and Quanhong Xue
Chemical Engineering Journal 327 28 (2017)
DOI: 10.1016/j.cej.2017.06.083
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Production of Valuable Lipophilic Compounds by Using Three Types of Interface Bioprocesses: Solid–Liquid Interface Bioreactor, Liquid–Liquid Interface Bioreactor, and Extractive Liquid-Surface Immobilization System

Shinobu Oda
Journal of Oleo Science 66 (8) 815 (2017)
DOI: 10.5650/jos.ess16240
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The Impact of Bacteria of the Genus Bacillus upon the Biodamage/Biodegradation of Some Metals and Extensively Used Petroleum-Based Plastics

Nataliia Tkachuk and Liubov Zelena
Corrosion and Materials Degradation 2 (4) 531 (2021)
DOI: 10.3390/cmd2040028
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Biodegradability of poly(butylene n-alkylenedionate)s composed of long-methylene chains as alternative polymers to polyethylene

Yuya Tachibana, Toyokazu Tsutsuba, Kohei Kageyama and Ken-ichi Kasuya
Polymer Degradation and Stability 190 109650 (2021)
DOI: 10.1016/j.polymdegradstab.2021.109650
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Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Susanne Schneiker, Vítor AP Martins dos Santos, Daniela Bartels, et al.
Nature Biotechnology 24 (8) 997 (2006)
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Intracellular distribution of fatty alcohol oxidase activity in Mucor circinelloides YR-1 isolated from petroleum contaminated soils

Hortencia Silva-Jiménez, Vanesa Zazueta-Novoa, Arelí Durón-Castellanos, et al.
Antonie van Leeuwenhoek 96 (4) 527 (2009)
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Biodegradation of hydrolyzed polyacrylamide by a Bacillus megaterium strain SZK-5: Functional enzymes and antioxidant defense mechanism

Tianwen Song, Shanshan Li, Yifeng Lu, et al.
Chemosphere 231 184 (2019)
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Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near-equatorial biomes have higher abundance of genes with potential for bioremediation

Jorge S. Oliveira, Wydemberg J. Araújo, Ricardo M. Figueiredo, et al.
BMC Microbiology 17 (1) (2017)
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Biology of Rhodococcus

Martina Cappelletti, Stefano Fedi and Davide Zannoni
Microbiology Monographs, Biology of Rhodococcus 16 137 (2019)
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Pseudomonas: Molecular and Applied Biology

Partap Bir Singh, Harvinder Singh Saini and Rachhpal S. Kahlon
Pseudomonas: Molecular and Applied Biology 81 (2016)
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Microbial communities of the discharge zone of oil- and gas-bearing fluids in low-mineral Lake Baikal

A. V. Lomakina, T. V. Pogodaeva, I. V. Morozov and T. I. Zemskaya
Microbiology 83 (3) 278 (2014)
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Soil bioremediation approaches for petroleum hydrocarbon polluted environments

Eman Koshlaf and Andrew S Ball
AIMS Microbiology 3 (1) 25 (2017)
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Evaluating T-RFLP protocols to sensitively analyze the genetic diversity and community changes of soil alkane degrading bacteria

Julia Giebler, Lukas Y. Wick, Hauke Harms and Antonis Chatzinotas
European Journal of Soil Biology 65 107 (2014)
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Isolation and characterization of Pseudomonas sp. NAF1 and its application in biodegradation of crude oil

Abdullah M. El Mahdi, Hamidi Abdul Aziz, Salem S. Abu Amr, Nour Sh El-Gendy and Hussein N. Nassar
Environmental Earth Sciences 75 (5) (2016)
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Analysis of the adaptation to alkanes of the marine bacteriumMarinobacter hydrocarbonoclasticussp 17 by two dimensional gel electrophoresis

Guillaume Ballihaut, Benjamin Klein, Philippe Goulas, et al.
Aquatic Living Resources 17 (3) 269 (2004)
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Latitudinal variations of CPI values of long-chain n-alkanes in surface soils: Evidence for CPI as a proxy of aridity

Pan Luo, PingAn Peng, HouYuan Lü, Zhuo Zheng and Xu Wang
Science China Earth Sciences 55 (7) 1134 (2012)
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Isolation and characterization of alkane degrading bacteria from petroleum reservoir waste water in Iran (Kerman and Tehran provenances)

Mehdi Hassanshahian, Mohammad Ahmadinejad, Hamid Tebyanian and Ashraf Kariminik
Marine Pollution Bulletin 73 (1) 300 (2013)
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Bioremediation of n-alkanes and the formation of biofloccules by Rhodococcus erythropolis NTU-1 under various saline conditions and sea water

C.W. Liu, W.N. Chang and H.S. Liu
Biochemical Engineering Journal 45 (1) 69 (2009)
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Profiling Mechanisms of Alkane Hydroxylase Activity In Vivo Using the Diagnostic Substrate Norcarane

Elena A. Rozhkova-Novosad, Jong-Chan Chae, Gerben J. Zylstra, et al.
Chemistry & Biology 14 (2) 165 (2007)
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Review of Microbial Processes in the Near-Surface Environment and Their Implications for the Chemical Fingerprinting of Hydrocarbon Fuels

Yakov Galperin and Isaac R. Kaplan
Environmental Forensics 12 (3) 236 (2011)
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Alkane-degrading bacteria at the soil-litter interface: comparing isolates with T-RFLP-based community profiles

Julia Giebler, Lukas Y. Wick, Antonis Chatzinotas and Hauke Harms
FEMS Microbiology Ecology 86 (1) 45 (2013)
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Production of a recombinant alkane hydroxylase (AlkB2) from Alcanivorax borkumensis

Mandana Miri, Bijan Bambai, Fatemeh Tabandeh, Majid Sadeghizadeh and Nasrin Kamali
Biotechnology Letters 32 (4) 497 (2010)
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Encyclopedia of Industrial Biotechnology

Owen P. Ward
Encyclopedia of Industrial Biotechnology (2010)
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Catalytic, Mild, and Selective Oxyfunctionalization of Linear Alkanes: Current Challenges

Mélanie Bordeaux, Anne Galarneau and Jullien Drone
Angewandte Chemie International Edition 51 (43) 10712 (2012)
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Degradation of recalcitrant aliphatic and aromatic hydrocarbons by a dioxin-degrader Rhodococcus sp. strain p52

Hai-Yan Yang, Rui-Bao Jia, Bin Chen and Li Li
Environmental Science and Pollution Research 21 (18) 11086 (2014)
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A new method for the detection of oil degrading genes in Pseudomonas aeruginosa based on transformation and PCR hybridization

Mathew Shiju and Hasan Hobani Yahya
International Journal of Biotechnology and Molecular Biology Research 6 (1) 1 (2015)
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Secondary successional trajectories of structural and catabolic bacterial communities in oil-polluted soil planted with hybrid poplar

Shinjini Mukherjee, Timo Sipilä, Pertti Pulkkinen and Kim Yrjälä
Molecular Ecology 24 (3) 628 (2015)
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Biology and Biotechnology of Patagonian Microorganisms

Marina L. Nievas, Rosana Polifroni, Federico del Brio and Marcela A. Sepúlveda
Biology and Biotechnology of Patagonian Microorganisms 43 (2016)
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A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization

Karin Kloos, Jean Charles Munch and Michael Schloter
Journal of Microbiological Methods 66 (3) 486 (2006)
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Abundance and Diversity of n-Alkane-Degrading Bacteria in a Forest Soil Co-Contaminated with Hydrocarbons and Metals: A Molecular Study on alkB Homologous Genes

Alfredo Pérez-de-Mora, Marion Engel and Michael Schloter
Microbial Ecology 62 (4) 959 (2011)
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The role of cytochrome P450 monooxygenases in microbial fatty acid metabolism

Inge N. A. Van Bogaert, Sara Groeneboer, Karen Saerens and Wim Soetaert
FEBS Journal 278 (2) 206 (2011)
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Identification of different alkane hydroxylase systems inRhodococcus ruberstrain SP2B, an hexane-degrading actinomycete

A. Amouric, M. Quéméneur, V. Grossi, et al.
Journal of Applied Microbiology 108 (6) 1903 (2010)
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Microbial degradation of nonylphenol and other alkylphenols—our evolving view

P. F. X. Corvini, A. Schäffer and D. Schlosser
Applied Microbiology and Biotechnology 72 (2) 223 (2006)
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Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system

Ramiro Vilchez-Vargas, Robert Geffers, María Suárez-Diez, et al.
Environmental Microbiology 15 (4) 1016 (2013)
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Isolation and characterization of alkane hydroxylases from a metagenomic library of Pacific deep-sea sediment

Meixiang Xu, Xiang Xiao and Fengping Wang
Extremophiles 12 (2) 255 (2008)
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Characterization of hydrocarbon-degrading bacterial strains isolated from oil-polluted soil

Ana-Maria Tanase, Robertina Ionescu, Iulia Chiciudean, Tatiana Vassu and Ileana Stoica
International Biodeterioration & Biodegradation 84 150 (2013)
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Effective degradation of organic pollutants in aqueous media by microbial strains isolated from soil of a contaminated industrial site

Filomena Sannino, Assunta Nuzzo, Valeria Ventorino, Olimpia Pepe and Alessandro Piccolo
Chemical and Biological Technologies in Agriculture 3 (1) (2016)
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Microbial Resources

Irena B. Ivshina, Maria S. Kuyukina and Anastasiya V. Krivoruchko
Microbial Resources 121 (2017)
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Functional analysis of alkane hydroxylase system derived from Pseudomonas aeruginosa E7 for low molecular weight polyethylene biodegradation

Hyun Jeong Jeon and Mal Nam Kim
International Biodeterioration & Biodegradation 103 141 (2015)
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Handbook of Molecular Microbial Ecology II

Fengping Wang, Meixiang Xu and Xiang Xiao
Handbook of Molecular Microbial Ecology II 475 (2011)
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Biodegradation of aged diesel in diverse soil matrixes: impact of environmental conditions and bioavailability on microbial remediation capacity

Nora B. Sutton, Pauline van Gaans, Alette A. M. Langenhoff, et al.
Biodegradation 24 (4) 487 (2013)
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Detection and transcription of n-alkane biodegradation genes (alkB) in the genome of a hydrocarbon-oxidizing bacterium Geobacillus subterraneus K

A. V. Korshunova, T. P. Tourova, N. M. Shestakova, et al.
Microbiology 80 (5) 682 (2011)
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Design of a secondary alcohol degradation pathway from Pseudomonas fluorescens DSM 50106 in an engineered Escherichia coli

Anett Kirschner, Josef Altenbuchner and Uwe T. Bornscheuer
Applied Microbiology and Biotechnology 75 (5) 1095 (2007)
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Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons

Antoine P. Pagé, Étienne Yergeau, Charles W. Greer and Andrew C. Singer
PLOS ONE 10 (7) e0132062 (2015)
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Fast biodegradation of long chain n-alkanes and crude oil at high concentrations with Rhodococcus sp. Moj-3449

Mojtaba Binazadeh, Iftekhar A. Karimi and Zhi Li
Enzyme and Microbial Technology 45 (3) 195 (2009)
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Characterization of the aerobic hydrocarbon-oxidizing enrichments from a high-temperature petroleum reservoir by comparative analysis of DNA- and RNA-derived clone libraries

N. M. Shestakova, A. V. Korshunova, E. M. Mikhailova, et al.
Microbiology 80 (1) 60 (2011)
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Bioresources and Bioprocess in Biotechnology

Indu C. Nair and K. Jayachandran
Bioresources and Bioprocess in Biotechnology 75 (2017)
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Microbiological aspects study of bioremediation of diesel-contaminated soils by biopile technique

R. Chemlal, A. Tassist, M. Drouiche, et al.
International Biodeterioration & Biodegradation 75 201 (2012)
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Diversity of flavin-binding monooxygenase genes (almA) in marine bacteria capable of degradation long-chain alkanes

Wanpeng Wang and Zongze Shao
FEMS Microbiology Ecology 80 (3) 523 (2012)
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Indigenous oil-degrading bacteria in crude oil-contaminated seawater of the Yellow sea, China

Wanpeng Wang, Rongqiu Zhong, Dapeng Shan and Zongze Shao
Applied Microbiology and Biotechnology 98 (16) 7253 (2014)
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Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis

Jeff S Bowman and Jody W Deming
BMC Genomics 15 (1) 1120 (2014)
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Molecular characterization of the alkB gene in the thermophilic Geobacillus sp. strain MH-1

Yi-Chen Liu, Tian-Tian Zhou, Jian Zhang, et al.
Research in Microbiology 160 (8) 560 (2009)
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Homology modeling and protein engineering of alkane monooxygenase in Burkholderia thailandensis MSMB121: in silico insights

Chakresh Kumar Jain, Money Gupta, Yamuna Prasad, Gulshan Wadhwa and Sanjeev Kumar Sharma
Journal of Molecular Modeling 20 (7) (2014)
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The influence of the herbicide 2-methyl-4-chlorophenoxyacetic acid (MCPA) on the mineralization of litter-derived alkanes and the abundance of the alkane monooxygenase gene (alkB) in the detritusphere of Pisum sativum (L.)

Stephan Schulz, Tatiana Yuyunkina, Holger Pagel, et al.
Biology and Fertility of Soils 48 (8) 933 (2012)
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From oil spills to barley growth - oil-degrading soil bacteria and their promoting effects

Annett Mikolasch, Anne Reinhard, Anna Alimbetova, et al.
Journal of Basic Microbiology 56 (11) 1252 (2016)
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Phytoremediation of an aged petroleum contaminated soil using endophyte infected and non-infected grasses

Mohsen Soleimani, Majid Afyuni, Mohammad A. Hajabbasi, et al.
Chemosphere 81 (9) 1084 (2010)
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Secondary succession of bacterial communities and co-occurrence of phylotypes in oil-polluted Populus rhizosphere

Shinjini Mukherjee, Mirja Heinonen, Magali Dequvire, et al.
Soil Biology and Biochemistry 58 188 (2013)
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Shifts in alkane-degrading bacteria genotypes during bioremediation of a vegetated coastal soil

Alexandra K. Shibata and Françoise M. Robert
World Journal of Microbiology and Biotechnology 25 (9) 1667 (2009)
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Expanding the alkane oxygenase toolbox: new enzymes and applications

Jan B van Beilen and Enrico G Funhoff
Current Opinion in Biotechnology 16 (3) 308 (2005)
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Biodegradation and Bioconversion of Hydrocarbons

Chooi Yit Heng, Madihah Md. Salleh, Adibah Yahya, Zaharah Ibrahim and Huszalina Hussin
Environmental Footprints and Eco-design of Products and Processes, Biodegradation and Bioconversion of Hydrocarbons 353 (2017)
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Alkane-oxidizing metalloenzymes in the carbon cycle

Rachel Narehood Austin and John T. Groves
Metallomics 3 (8) 775 (2011)
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Cage Escape Competes with Geminate Recombination during Alkane Hydroxylation by the Diiron Oxygenase AlkB

Rachel N. Austin, Kate Luddy, Karla Erickson, et al.
Angewandte Chemie International Edition 47 (28) 5232 (2008)
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Biofilm lifestyle enhances diesel bioremediation and biosurfactant production in the Antarctic polyhydroxyalkanoate producer Pseudomonas extremaustralis

Paula M. Tribelli, Carla Di Martino, Nancy I. López and Laura J. Raiger Iustman
Biodegradation 23 (5) 645 (2012)
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Biodegradation and Bioconversion of Hydrocarbons

David I. Little and Yakov Galperin
Environmental Footprints and Eco-design of Products and Processes, Biodegradation and Bioconversion of Hydrocarbons 1 (2017)
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Biodegradation of Aliphatic and Aromatic Hydrocarbons by Nocardia sp. H17-1

Kyung-Hwa Baek, Byung-Dae Yoon, Hee-Mock Oh, Hee-Sik Kim and In-Sook Lee
Geomicrobiology Journal 23 (5) 253 (2006)
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A Proteomic Approach to Understand the Role of the Outer Membrane Porins in the Organic Solvent-Tolerance of Pseudomonas aeruginosa PseA

R. Hemamalini, Sunil Khare and John R. Battista
PLoS ONE 9 (8) e103788 (2014)
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Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments

Stephan Schulz, Julia Giebler, Antonis Chatzinotas, et al.
The ISME Journal 6 (9) 1763 (2012)
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Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils

Shun Tsuboi, Shigeki Yamamura, Toshiaki Nakajima-Kambe and Kazuhiro Iwasaki
SpringerPlus 4 (1) (2015)
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Crystal Structure of Long-Chain Alkane Monooxygenase (LadA) in Complex with Coenzyme FMN: Unveiling the Long-Chain Alkane Hydroxylase

Liu Li, Xueqian Liu, Wen Yang, Feng Xu, Wei Wang, Lu Feng, Mark Bartlam, Lei Wang and Zihe Rao
Journal of Molecular Biology 376 (2) 453 (2008)
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Cloning and Expression of an Alkane Degradation Pathway fromPseudomonas fluorescens DSM50106 inE. coli

A. Kirschner, J. Altenbuchner and U. T. Bornscheuer
Chemie Ingenieur Technik 78 (9) 1411 (2006)
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Hexadecane-degradation by Teskumurella and Stenotrophomonas Strains Isolated From Hydrocarbon Contaminated Soils

Hamid Tebyanian, Mehdi Hassanshahian and Ashraf Kariminik
Jundishapur Journal of Microbiology 6 (7) (2013)
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Expression of an alkane monooxygenase (alkB) gene and methyl tert-butyl ether co-metabolic oxidation in Pseudomonas citronellolis

Ana Luisa Bravo, Juan Carlos Sigala, Sylvie Le Borgne and Marcia Morales
Biotechnology Letters 37 (4) 807 (2015)
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Regioselective ω-hydroxylation of medium-chain n-alkanes and primary alcohols by CYP153 enzymes from Mycobacterium marinum and Polaromonas sp. strain JS666

Daniel Scheps, Sumire Honda Malca, Helen Hoffmann, Bettina M. Nestl and Bernhard Hauer
Organic & Biomolecular Chemistry 9 (19) 6727 (2011)
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Enrichment of aliphatic, alicyclic and aromatic acids by oil-degrading bacteria isolated from the rhizosphere of plants growing in oil-contaminated soil from Kazakhstan

Annett Mikolasch, Anel Omirbekova, Peter Schumann, et al.
Applied Microbiology and Biotechnology 99 (9) 4071 (2015)
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Katalytische, milde und selektive Oxyfunktionalisierung von linearen Alkanen: aktuelle Herausforderungen

Mélanie Bordeaux, Anne Galarneau and Jullien Drone
Angewandte Chemie 124 (43) 10870 (2012)
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Quantitative detection of the oil-degrading bacterium Acinetobacter sp. strain MUB1 by hybridization probe based real-time PCR

Seksan Phrommanich, Sudarat Suanjit, Suchart Upatham, et al.
Microbiological Research 164 (4) 486 (2009)
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Enrichment of new alkane oxidizing bacterial strains for human drug metabolite production

Matthias Schittmayer, Zhibin Liu, He Bingfang, et al.
Journal of Molecular Catalysis B: Enzymatic 57 (1-4) 72 (2009)
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Offline bioregeneration of spent activated carbon loaded with real Produced Water and its adsorption capacity for benzene and toluene

Paolo Roccaro, Giacomo Lombardo and Federico G.A. Vagliasindi
Desalination and Water Treatment 55 (3) 756 (2015)
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Recent Advances in Bacterial Degradation of Hydrocarbons

Emiliana Pandolfo, Anna Barra Caracciolo and Ludovica Rolando
Water 15 (2) 375 (2023)
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Isolation and Characterization of Long-chain n-Alkane-Degrading Bacillus coagulans from Contaminated Soil

M. Lu, Z. Zhang, X. Wei and S. Sun
Petroleum Science and Technology 29 (18) 1895 (2011)
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Potential of Baeyer-Villiger monooxygenases as an enzyme for polyethylene decomposition

Ye Rin Yoon and Yu-Sin Jang
Journal of Applied Biological Chemistry 64 (4) 433 (2021)
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Esmaeil Shahsavari, Eric M. Adetutu and Andrew S. Ball
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Hydrocarbon and Lipid Microbiology Protocols

Mélanie Bordeaux and Jullien Drone
Springer Protocols Handbooks, Hydrocarbon and Lipid Microbiology Protocols 125 (2015)
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Diversity of the alkB Genes of n-Alkane Biodegradation in Thermophilic Hydrocarbon-Oxidizing Bacteria of the Genera Geobacillus, Parageobacillus, and Aeribacillus

T. P. Tourova, D. Sh. Sokolova, E. M. Semenova, A. B. Poltaraus and T. N. Nazina
Microbiology 87 (3) 301 (2018)
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Microbial degradation of n-hexadecane in mineral salt medium as mediated by degradative enzymes

Shweta Mishra and S.N. Singh
Bioresource Technology 111 148 (2012)
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Phylogenetic diversity of bacterial communities associated with bioremediation of crude oil in microcosms

Hui Wang, Caixia Wang, Meng Lin, et al.
International Biodeterioration & Biodegradation 85 400 (2013)
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Rongrong Gao, Rui Liu and Chaomin Sun
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Biodegradation and Bioconversion of Hydrocarbons

Alkane-oxidizing metalloenzymes in the carbon cycle

Cage Escape Competes with Geminate Recombination during Alkane Hydroxylation by the Diiron Oxygenase AlkB

Biofilm lifestyle enhances diesel bioremediation and biosurfactant production in the Antarctic polyhydroxyalkanoate producer Pseudomonas extremaustralis

Biodegradation and Bioconversion of Hydrocarbons

Biodegradation of Aliphatic and Aromatic Hydrocarbons by Nocardia sp. H17-1

A Proteomic Approach to Understand the Role of the Outer Membrane Porins in the Organic Solvent-Tolerance of Pseudomonas aeruginosa PseA

Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments

Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils

Crystal Structure of Long-Chain Alkane Monooxygenase (LadA) in Complex with Coenzyme FMN: Unveiling the Long-Chain Alkane Hydroxylase

Cloning and Expression of an Alkane Degradation Pathway fromPseudomonas fluorescens DSM50106 inE. coli

Hexadecane-degradation by Teskumurella and Stenotrophomonas Strains Isolated From Hydrocarbon Contaminated Soils

Expression of an alkane monooxygenase (alkB) gene and methyl tert-butyl ether co-metabolic oxidation in Pseudomonas citronellolis